Software

This page gathers R packages and code that I have developed or contributed to. The repositories are divided into two categories: those linked to articles and/or visualizations, and those that are independent projects. All are available on my GitHub and GitLab accounts.

Packages

bioregion is an R package develop to analyze and compare several methods of bioregionalisations.
Open science: [paper]

TDLM is an R package develop to perform systematic comparison of trip distribution laws and models.
Open science: [paper]

Repositories

Repositories linked to articles and/or visualizations

Plant-spectral-diversity proposes a method to compare and to combine in situ and remote sensing data to measure the diversity of plant and spectral species in France.
Open science: [paper]

Biblio-TETIS contains all the material needed to extract the co-publication network of UMR TETIS and run the associated interactive web application.
Open science: [viz]

Mobile-service-diversity proposes a method to map the diversity of mobile service usage and its relation with land use in cities.
Open science: [paper]

Intersectionality proposes several tools and metrics to explore mismatch in hourly population profiles of French districts for gender, age and educational groups from an intersectional point of view.
Open science: [paper] [viz]

Sample-bias-correction-SDMs proposes a method to assess the effect of sample bias correction in Species Distribution Models.
Open science: [paper]

Mismatch-connectivity proposes a method to reclassify and compare connectivity maps.
Open science: [paper]

GIS-MCDA-OWA proposes a methodology based on an efficient exploration of the decision-strategy space defined by the level of risk and trade-off in GIS-MCDA with OWA.
Open science: [paper]

Map-potential-paths proposes a method to map potential paths for livestock movements by combining information contained in livestock mobility networks with landscape connectivity based on land use and land cover features.
Open science: [paper]

Biogeographical-network-analysis provides an R script to identify and characterize the biogeographical structure of a region. It also contains all the materials needed to run an interactive web application developed to visualize the obtained bioregions at different scales.
Open science: [paper] [viz]

AHIA contains all the materials needed to run an interactive web application to visualize socio-ecological interactions at different scales across 16 case studies in Europe.
Open science: [paper] [viz]

OWA-weights-generator implements a method to automatically determine ordered weighted averaging (OWA) weights using truncated distributions. It also contains all the materials needed to run an interactive web application developed to visualize the obtained distribution, to download the associated weights and to design experimental deigns.
Open science: [paper] [viz]

Most-frequented-locations provides a Python script to extract Most Frequented Locations from individual spatio-temporal trajectories.
Open science: [paper]

Trip-distribution-laws-and-models provides several Java scripts to estimate mobility flows with different types of trip distribution laws and models.
Open science: [paper]

APMC proposes an implementation in R of several Approximate Bayesian Computation (ABC) algorithms.
Open science: [paper]

Other repositories

Coauthorship-network provides R scripts to create and visualize a coauthorship network with R.
[example]

Inkscape-presentation provides a Python script that generates a PDF presentation based on the layer(s) contained in an Inkscape SVG file.

XS provides several R scripts to generate a set of Origin-Destination (OD) matrices based on individual mobility flow information.

Flickr provides scripts to automate Flickr queries using the Flickr API and to automatically send messages to a list of Flickr contacts through a contact form from your Flickr account.

Vessel-trip-from-path provides two Python scripts to extract and aggregate trips from spatio-temporal individual trajectories.

KML-movie-Python provides a Python script for plotting trajectories over time on Google Earth.
[example]

Websites

My personal academic website made with Jekyll based on the Hyde theme.